| population | |
| Aiko-dake | |
| Ambo | |
| Funayuki | |
| Furu-dake | |
| Haru | |
| Isso | 458 |
| Iwayadomari | |
| Joga-hana | |
| Jr Hotel Yakushima | |
| Kawahara | |
| Koseda | 2345 |
| Koshima | 1245 |
| Kurio | 1803 |
| Kuro-saki | |
| Kuromi-dake | |
| Kusugawa | |
| Miyanoura | 6544 |
| Miyanoura-dake |
 | Yakushima Airport | ~ 15.72 km |
| New Tanegashima Airport | ~ 55.01 km |
| Kagoshima Airport | ~ 163.28 km |
| Miyazaki Airport | ~ 192.60 km |
| Amami Airport | ~ 226.35 km |
| Kikai Airport | ~ 231.99 km |
| Amakusa Airport | ~ 239.68 km |
| Kumamoto Airport | ~ 278.94 km |
| Nagasaki Airport | ~ 291.13 km |
